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facilitate the interpretation and integration of such epigenetic layers of molecular information: EpiExplorer allows for an integrative view and interactive exploration of genomic and epigenomic features based [...] EpiExplorer and RnBeads: Integrative Analysis of Epigenomic Data EpiExplorer and RnBeads: Integrative Analysis of Epigenomic Data Spotlight: Released Wednesday, 08 May 2013 Felipe Albrecht and Fabian Müller [...] lab scientists and computationally inclined scientists to run the entire analysis pipeline on data originating from DNA methylation experiments: Experimental biases can be detected and DNA methylation

Yassen Assenov DEPT. 3 Computational Biology and Applied Algorithmics Phone: +49 681 9325-3009 Email: yassen@mpi-inf.mpg.de Konstantin Halachev DEPT. 3 Computational Biology and Applied Algorithmics Phone: [...] Second Code – Computational Epigenetics Deciphering the Second Code – Computational Epigenetics Yassen Assenov & Konstantin Halachev & Fabian Müller Deciphering the Second Code – Computational Epigenetics [...] encodes the appearance and behavior of our cells. However, there is a multitude of additional layers of control that regulate the ways in which the DNA is packed and processed and thus determine the fate

University and the University of Bonn. Initially, Thomas Lengauer performed research on the computer-based analysis and prediction of three-dimensional structures of proteins and on computer-aided drug [...] level using mathematical models and computers. Computational biology gained central relevance with the emergence of techniques in molecular biology that developed before and during the first sequencing of [...] on the computer side." Currently, bioinformatical methods are widely applied as a high-tech tool in pharmaceutics, agriculture, and biotech research. The power of computers and the sophisticated algorithms

theoretical computer science. Graphs can be compared to road maps. In a graph, nodes – or "vertices" – represent locations, such as cities or intersections. Lines, called " edges", connect these nodes and can [...] Dijkstra’s algorithm, the new paper takes a close look at the part that causes most of its computational cost: the interaction with a so-called "priority queue". During its execution, Dijkstra's algorithm needs [...] overhead of log(n) per operation, and thus n log(n) time in total. "Our new algorithm recursively shrinks the size of the frontier being considered by mixing Dijkstra's and another textbook algorithm, called

Hajira and Omeliyanenko, Janna and Zhang, Wen and Lissandrini, Matteo and Biswas, Russa and de Melo, Gerard and Bonifati, Angela and Vakaj, Edlira and Dragoni, Mauro and Graux, Damien}, LANGUAGE = {eng} [...] (ECIR 2023)}, EDITOR = {Kamps, Jaap and Goeuriot, Lorraine and Crestani, Fabio and Maistro, Maria and Joho, Hideao and Davis, Brian and Gurrin, Cathal and Kruschwitz, Udo and Caputo, Annalina}, PAGES = {359--366} [...] Language Models and Knowledge Graphs: Opportunities and Challenges}, AUTHOR = {Pan, Jeff Z. and Razniewski, Simon and Kalo, Jan-Christoph and Singhania, Sneha and Chen, Jiaoyan and Dietze, Stefan and Jabeen, Hajira

traversal and numerical computations. We have readily demonstrated the potential of these representations on the Graphics Processing Unit (GPU) and our current focus is on multicore systems and on tailoring [...] access patterns, and cache performance. To avoid data redundancy, we target seamless transition between data traversal and numerics as it is a valuable asset for coding convenience and enhanced performance [...] matrix operations, cache locality and fast on-chip memory when performing localized operations. Applications. We target and re-abstract some of the most commonly used and far reaching applications across

works on methods for interactive exploration of large document collections, for the analysis and automated extraction of knowledge from natural language text, and for pattern mining and logical reasoning [...] ed challenges to information management. The development of the Web 2.0 and social networks, the ubiquity of mobile devices and sensor networks, as well as advances in gathering scientific data contribute [...] of many users and user groups is analyzed in order to create recommendations for each individual user. The key challenges that recommender systems need to solve are (1) the modeling and prediction of user

DEPT. 3 Computational Biology and Applied Algorithmics Phone +49 681 302 70880 Email t.marschall mpi-inf.mpg.de http://mpi-inf.mpg.de Structural Variation in Genomes Protein Structure and Interactions Bio [...] in chromosomes: we inherit 23 chromosomes from our mother and father, respectively. A chromosome consists of a long DNA molecule, stabilized and spatially structured by special proteins. The DNA encodes [...] constituting bases adenine (A), cytosine (C), guanine (G), and thymine (T). In this sense, a chromosome can be viewed as a sequence of the letters A, C, G, and T. Likewise, we can represent a genome as a set of

in its top level, and 9 levels in its deepts part. HYENA was trained on 1.6 million instances extracted from 50,000 randomly selected Wikipedia articles. HYENA uses neighboring words and bigrams, part-of-speech [...] <br/> You can browse our hierarchy in the pdf file below or using our Interactive Browser . Properities of the dataset used to train and evaluate HYENA data property training testing # of articles 50,000 [...] Research Departments Databases and Information Systems Research YAGO-NAGA HYENA HYENA: Hierarchical Type Classification for Entity Names HYENA is a multi-label classifier for entity types based on hierarchical

of a series of activities starting with setting up the hardware and introducing basic configuration for VLANs and IPv4/IPv6 networks and gradually moving to more advanced topics, including but not limited [...] private networks, security, network monitoring, and troubleshooting. Requirements: Participants should have sufficient knowledge of computer networks and how the Internet works, e.g., by having successfully [...] "On the practice of System and Network Engineering" In our block-seminar "On the practice of System and Network Engineering" , we will go into the practical side of system and network engineering, covering